Filename: /home/aakarsh/window_size_testing/time_compare3.py

Line #    Mem usage    Increment  Occurrences   Line Contents
=============================================================
   134    167.1 MiB    167.1 MiB           1   @profile
   135                                         def direct(geno_matrix_in):
   136                                             
   137    167.1 MiB      0.0 MiB           1       exact = np.zeros((N, int((M*(M+1))/2)))
   138                                         
   139    167.1 MiB      0.0 MiB           1       start = time.time()
   140                                         
   141    167.1 MiB      0.0 MiB           1       s = 0
   142    937.9 MiB      0.0 MiB         101       for i in range(M):
   143    937.9 MiB      0.0 MiB        5050           for j in range(i+1, M):
   144    937.9 MiB      0.0 MiB        4950               feature = geno_matrix_in[:,i]*geno_matrix_in[:,j]
   145    937.9 MiB    770.7 MiB        4950               exact[:,s] = feature
   146    937.9 MiB      0.0 MiB        4950               s += 1
   147                                         
   148   1039.6 MiB    101.7 MiB           1       exact_svd = np.linalg.svd(exact, full_matrices=False, compute_uv=False)
   149                                         
   150   1039.6 MiB      0.0 MiB           1       end = time.time()
   151   1039.6 MiB      0.0 MiB           1       exact_time = end - start
   152   1039.6 MiB      0.0 MiB           1       return exact_time


